Posts by Collection

portfolio

publications

Iodine Quantification to Distinguish Clear Cell from Papillary Renal Cell Carcinoma at Dual-Energy Multidetector CT: A Multireader Diagnostic Performance Study

Published in Radiology, 2014

This study investigates whether dual-energy multidetector CT imaging with iodine quantification can distinguish between clear cell and papillary renal cell carcinoma subtypes.

Recommended citation: Mileto, A., Marin, D., Alfaro-Cordoba, M., Ramirez-Giraldo, J. C., Eusemann, C. D., Scribano, E., Blandino, A., Mazziotti, S., Ascenti, G. (2014). "Iodine Quantification to Distinguish Clear Cell from Papillary Renal Cell Carcinoma at Dual-Energy Multidetector CT: A Multireader Diagnostic Performance Study." Radiology. 273(3):813-820.
Download Paper

Nonlinear Image Blending for Dual-Energy MDCT of the Abdomen: Can Image Quality Be Preserved If the Contrast Medium Dose Is Reduced?

Published in American Journal of Roentgenology, 2014

This study compares the image quality of a dual-energy nonlinear image blending technique at reduced load of contrast medium with a simulated 120-kVp linear blending approach.

Recommended citation: Alfaro-Córdoba, M., et al. (2014). "Nonlinear Image Blending for Dual-Energy MDCT of the Abdomen: Can Image Quality Be Preserved If the Contrast Medium Dose Is Reduced?" American Journal of Roentgenology. 203(4).
Download Paper

An Intentional AI for Hanabi

Published in Proceedings of the AAAI Conference on Artificial Intelligence, 2017

This paper presents an AI agent for the cooperative card game Hanabi that uses communication theory and intentionality to improve human-AI cooperation, demonstrating significantly better performance when playing with human partners compared to previous AI approaches.

Recommended citation: Eger, M., Martens, C., & Alfaro Córdoba, M. (2017). "An Intentional AI for Hanabi." Proceedings of the AAAI Conference on Artificial Intelligence and Interactive Digital Entertainment.
Download Paper

The Use of Functional Data Analysis to Evaluate Activity in a Spontaneous Model of Degenerative Joint Disease Associated Pain in Cats

Published in PLOS ONE, 2017

This paper demonstrates the use of functional data analysis to evaluate activity patterns in cats with degenerative joint disease, revealing bimodal activity patterns with morning and evening peaks that differ between weekdays and weekends.

Recommended citation: Gruen, M. E., Alfaro-Córdoba, M., Thomson, A. E., Worth, A. C., Staicu, A. M., & Lascelles, B. D. X. (2017). "The Use of Functional Data Analysis to Evaluate Activity in a Spontaneous Model of Degenerative Joint Disease Associated Pain in Cats." PLOS ONE. 12(1): e0169576.
Download Paper

A comparison of testing methods in scalar-on-function regression

Published in AStA Advances in Statistical Analysis, 2019

This paper compares different testing methods for scalar-on-function regression models, providing insights into their performance and practical applications in functional data analysis.

Recommended citation: Tekbudak, M.Y., Alfaro-Córdoba, M., Maity, A., & Staicu, A.M. (2019). "A comparison of testing methods in scalar-on-function regression." AStA Advances in Statistical Analysis. 103(3), 411-436.
Download Paper

Spectral measure of color variation of black-orange-black (BOB) pattern in small parasitoid wasps (Hymenoptera: Scelionidae), a statistical approach

Published in PLOS ONE, 2019

This paper presents the first statistical analysis of the black-orange-black color pattern in small parasitoid wasps using microspectrophotometry and functional data analysis, revealing insights into pigment composition and evolutionary relationships among genera.

Recommended citation: Mora-Castro, R., Hernández-Jiménez, M., Alfaro-Córdoba, M., Avendano, E., & Hanson-Snortum, P. (2019). "Spectral measure of color variation of black-orange-black (BOB) pattern in small parasitoid wasps (Hymenoptera: Scelionidae), a statistical approach." PLOS ONE. 14(10): e0218061.
Download Paper

Use of unconventional mixed Acetone-Butanol-Ethanol solvents for anthocyanin extraction from Purple-Fleshed sweetpotatoes

Published in Food Chemistry, 2020

This paper investigates the use of unconventional acetone-butanol-ethanol (ABE) solvent mixtures for extracting anthocyanins from purple-fleshed sweetpotatoes, demonstrating that fermentation-derived diluted solvents can be as effective as traditional concentrated solvents while supporting sustainable biorefinery processes.

Recommended citation: Zuleta-Correa, A., Chinn, M. S., Alfaro-Córdoba, M., Truong, V. D., Yencho, G. C., & Bruno-Bárcena, J. M. (2020). "Use of unconventional mixed Acetone-Butanol-Ethanol solvents for anthocyanin extraction from Purple-Fleshed sweetpotatoes." Food Chemistry, 314, 125959.
Download Paper

Aridity Trends in Central America: A Spatial Correlation Analysis

Published in Atmosphere, 2020

This paper analyzes temporal trends in aridity, runoff, precipitation, temperature, and potential evapotranspiration across Central America (1970-1999), introducing a spatial correlation methodology to identify extreme trend outliers and assess regional climate change significance.

Recommended citation: Alfaro-Córdoba, M., Hidalgo, H. G., & Alfaro, E. J. (2020). "Aridity Trends in Central America: A Spatial Correlation Analysis." Atmosphere, 11(4), 427. DOI: 10.3390/atmos11040427
Download Paper

First evidence for an aposematic function of a very common color pattern in small insects

Published in PLOS ONE, 2021

This paper provides the first experimental evidence that the widespread black-orange-black (BOB) color pattern in small parasitoid wasps serves an aposematic (warning) function, using behavioral experiments with jumping spider predators and toxicity assays.

Recommended citation: Mora-Castro, R., Alfaro-Córdoba, M., Hernández-Jiménez, M., Fernández Otárola, M., Méndez-Rivera, M., Ramírez-Morales, D., et al. (2021). "First evidence for an aposematic function of a very common color pattern in small insects." PLOS ONE. 16(2): e0237288.
Download Paper

A School and a Network: CODATA-RDA Data Science Summer Schools Alumni Survey

Published in Data Science Journal, 2021

This paper presents results from an alumni survey of the CODATA-RDA Schools for Research Data Science (SRDS), demonstrating the impact of residential data science training programs in building capacity and fostering networks among early career researchers from low/middle-income countries.

Recommended citation: Bezuidenhout, L., Drummond-Curtis, S., Walker, B., Shanahan, H., & Alfaro-Córdoba, M. (2021). "A School and a Network: CODATA-RDA Data Science Summer Schools Alumni Survey." Data Science Journal. 20: 10, pp. 1–12. DOI: 10.5334/dsj-2021-010
Download Paper

Influence of surface roughness on the spectroscopic characterization of jadeite and greenstones archaeological artifacts: The axe-god pendants case study

Published in Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 2022

This study demonstrates how surface roughness significantly affects infrared, Raman and X-ray fluorescence spectra of jadeite and greenstone archaeological artifacts, providing methodological guidelines for non-invasive characterization using Costa Rican axe-god pendants as a case study.

Recommended citation: Hernández-Murillo, C., García-Piedra, S., Alfaro-Córdoba, M., Fernández-Esquivel, P., Ménager, M., & Montero, M. L. (2022). "Influence of surface roughness on the spectroscopic characterization of jadeite and greenstones archaeological artifacts: The axe-god pendants case study." Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy. 267: 120508.
Download Paper

Ten simple rules to host an inclusive conference

Published in PLOS Computational Biology, 2022

This editorial provides practical guidelines for organizing inclusive conferences based on lessons learned from the 2021 useR! statistical computing conference, addressing barriers to participation and promoting diversity across multiple dimensions.

Recommended citation: Joo, R., Sánchez-Tapia, A., Mortara, S., Bellini Saibene, Y., Turner, H., Hug Peter, D., et al. (2022). "Ten simple rules to host an inclusive conference." PLOS Computational Biology. 18(7): e1010164.
Download Paper

Spatio-temporal downscaling emulator for regional climate models

Published in Environmetrics, 2023

This paper describes how to use a spatio-temporal statistical model with varying coefficients as a downscaling emulator for regional climate models, offering a computationally efficient alternative to traditional dynamical downscaling methods.

Recommended citation: Barboza, L. A., Chou Chen, S. W., Alfaro Córdoba, M., Alfaro, E. J., & Hidalgo, H. G. (2023). "Spatio-temporal downscaling emulator for regional climate models." Environmetrics. DOI: 10.1002/env.2815
Download Paper

Costa Rican wetlands vulnerability index

Published in Progress in Physical Geography, 2023

This paper develops a comprehensive vulnerability index for Costa Rican wetlands using field data from the National Wetlands Inventory, combining condition and hazard indices to assess the conservation status of 10,699 wetland polygons and identify priority areas for restoration and management.

Recommended citation: Veas-Ayala, N., Alfaro-Córdoba, M., & Quesada-Román, A. (2023). "Costa Rican wetlands vulnerability index." Progress in Physical Geography. 47(4), 521–540. DOI: 10.1177/03091333221134189
Download Paper

Foundational Data Science Training for Health Equity Researchers at Minority Serving Institutions: A SoRDS Event

Published in 2023 IEEE 11th International Conference on Healthcare Informatics (ICHI), 2023

This paper describes the adaptation of the CODATA-RDA Schools of Research Data Science (SoRDS) program to provide foundational data science training specifically for health equity researchers at minority-serving institutions in the southeastern United States.

Recommended citation: Quick, R., Alfaro Córdoba, M., Diggs, S., Cobe, R., Bezuidenhout, L., Shanahan, H., & Peterson, B. (2023). "Foundational Data Science Training for Health Equity Researchers at Minority Serving Institutions: A SoRDS Event." 2023 IEEE 11th International Conference on Healthcare Informatics (ICHI). DOI: 10.1109/ICHI57859.2023.00115
Download Paper

Central American climate extreme trends: A statistical analysis of CLIMDEX indices

Published in International Journal of Climatology, 2024

This paper analyzes precipitation and temperature extreme trends in Central America using CLIMDEX indices, employing novel statistical techniques that account for spatial correlation to assess trend significance and detect climate change patterns from 1981-2020.

Recommended citation: Alfaro-Córdoba, M., Mora-Sandí, N. P., Hidalgo, H. G., & Alfaro, E. J. (2024). "Central American climate extreme trends: A statistical analysis of CLIMDEX indices." International Journal of Climatology, 44(11), 4115-4126. DOI: 10.1002/joc.8571
Download Paper

Classification of oils and margarines by FTIR spectroscopy in tandem with machine learning

Published in Food Chemistry, 2024

This paper demonstrates the combined utility of ATR-FTIR spectroscopy and machine learning techniques for authenticating and classifying pure oils and margarines, while quantifying adulteration levels using regression models.

Recommended citation: Tachie, C. Y. E., Obiri-Ananey, D., Alfaro-Cordoba, M., Tawiah, N. A., & Aryee, A. N. A. (2024). "Classification of oils and margarines by FTIR spectroscopy in tandem with machine learning." Food Chemistry, 431, 137077.
Download Paper

talks

teaching

STAT 5 - Statistics

Undergraduate course, UC Santa Cruz, Statistics Department, 2021

General Education statistics course taught across multiple terms (Spring 2021, Fall 2022, Winter 2024, Spring 2024, Winter 2025, Spring 2025). Total enrollment: 1400 students across 6 sections.

STAT 131 - Introduction to Probability Theory

Undergraduate course, UC Santa Cruz, Statistics Department, 2021

Upper division probability theory course taught across four terms (Fall 2021, Winter 2022, Winter 2023, Winter 2025). Total enrollment: 500 students.

STAT 80A - Gambling and Gaming

Undergraduate course, UC Santa Cruz, Statistics Department, 2021

General Education course exploring statistics through gambling and gaming taught across two terms (Fall 2021, Spring 2022). Total enrollment: 115 students.

STAT 108 - Linear Regression

Undergraduate course, UC Santa Cruz, Statistics Department, 2022

Upper division course on linear regression analysis taught across two terms (Winter 2022, Fall 2022). Total enrollment: 12 students.

STAT 17 - Statistics for Business

Undergraduate course, UC Santa Cruz, Statistics Department, 2023

Lower division statistics course for business students taught across three terms (Winter 2023, Spring 2023, Fall 2023). Total enrollment: 401 students.

STAT 80B - Data Visualization

Undergraduate course, UC Santa Cruz, Statistics Department, 2024

General Education course on data visualization taught Spring 2024. Total enrollment: 25 students.

STAT 7 - Statistics

Undergraduate course, UC Santa Cruz, Statistics Department, 2024

General Education statistics course taught Fall 2024. Total enrollment: 200 students.

STAT 155 - Methods in Data Science

Undergraduate course, UC Santa Cruz, Statistics Department, 2025

Upper division course on methods in data science taught Spring 2025. Total enrollment: 12 students.